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- Safeness problem
- Satisfiability problem
- Saturated vertex
- Schema simulation
- Schema with distributed memory
- Schema with node number repetition
- Scheme with indirect addressing
- Scheme with separators
- Scorpion
- Search forest
- Second Order formula
- Section
- Segment
- Seidel characteristic polynomial
- Seidel spectrum
- Seidel switching
- Self-centered graph
- Self-complementary graph
- Self-converse digraph
- Self-loop
- Self-modified Petri net
- Self-negational signed graph
- Self-opposite directed graph
- Selfdual tournament
- Semantic net
- Semantic network
- Semaphore
- Semi-Strong Perfect Graph Conjecture
- Semicomplete c-partite digraph
- Semicomplete digraph
- Semicomplete multipartite digraph
- Semicycle
- Semidecidable problem
- Semieuler graph
- Semigirth
- Semigraph
- Semigroup of a graph
- Semihamiltonian graph
- Semiirreducible graph
- Semikernel
- Semikernel modulo F
- Semiorder
- Semipath
- Semiregular group of a graph
- Semisymmetric graph
- Sentence
- Sentencial form
- Separable graph
- Separating set
- Separating triangle